STRINGSTRING
Kkor_1218 Kkor_1218 Kkor_0550 Kkor_0550 Kkor_1219 Kkor_1219 rpoB rpoB rpoA rpoA Kkor_1679 Kkor_1679 rpoC rpoC Kkor_0839 Kkor_0839 rpoZ rpoZ Kkor_0803 Kkor_0803 Kkor_0951 Kkor_0951
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_1218Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: psa:PST_3518 transcription factor for denitrification gene expression elicited by NO. (240 aa)    
Predicted Functional Partners:
Kkor_0550
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide- binding; KEGG: cko:CKO_01409 fumarate/nitrate reduction transcriptional regulator.
  
     0.648
Kkor_1219
KEGG: psa:PST_2102 hypothetical protein.
     
 0.604
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.580
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.567
Kkor_1679
PFAM: pentapeptide repeat protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sde:Sde_0087 hypothetical protein.
  
 0.550
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.505
Kkor_0839
Hpt sensor hybrid histidine kinase; KEGG: hch:HCH_01804 signal transduction histidine kinase; PFAM: response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein.
   
 
 0.489
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.469
Kkor_0803
KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
  
 
 0.442
Kkor_0951
KEGG: maq:Maqu_1890 hypothetical protein.
    
  0.431
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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