STRINGSTRING
Slit_1109 Slit_1109 Slit_1110 Slit_1110 Slit_1108 Slit_1108
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1109Hypothetical protein; KEGG: pst:PSPTO_3848 DNA internalization-related competence protein ComEC/Rec2. (148 aa)    
Predicted Functional Partners:
Slit_1110
KEGG: eum:ECUMN_3728 hypothetical protein.
       0.584
Slit_1108
PFAM: bifunctional deaminase-reductase domain protein; KEGG: ote:Oter_2260 deaminase-reductase domain-containing protein.
       0.403
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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