STRINGSTRING
Caci_3455 Caci_3455 Caci_3454 Caci_3454 Caci_3456 Caci_3456 Caci_3524 Caci_3524 Caci_1027 Caci_1027 Caci_0438 Caci_0438 Caci_6647 Caci_6647 Caci_6698 Caci_6698 Caci_5702 Caci_5702 Caci_6360 Caci_6360 Caci_6359 Caci_6359
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3455PFAM: aminotransferase class I and II; KEGG: pst:PSPTO_3865 hypothetical protein. (377 aa)    
Predicted Functional Partners:
Caci_3454
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: scl:sce8257 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.688
Caci_3456
Conserved hypothetical protein; Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-ornithine and L-arginine, leading to (3S)-3-hydroxy-L-ornithine and (3S)-3- hydroxy-L-arginine, respectively. Cannot use L-lysine, D-ornithine, or D-arginine as substrate.
 
 
   0.671
Caci_3524
KEGG: sgr:SGR_597 hypothetical protein.
  
     0.648
Caci_1027
PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: rca:Rcas_2857 peptidase S41.
 
     0.606
Caci_0438
KEGG: sco:SCO5271 hypothetical protein.
  
     0.579
Caci_6647
PFAM: peptidase S41; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: sco:SCO2967 carboxy-terminal processing protease precursor.
 
     0.579
Caci_6698
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_3375 helix-hairpin-helix DNA-binding motif-containing protein.
  
     0.561
Caci_5702
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: sgr:SGR_5483 putative glutamate synthase (NADPH) large subunit.
  
  
 0.560
Caci_6360
PFAM: ASPIC/UnbV domain protein; KEGG: saq:Sare_0555 ASPIC/UnbV domain-containing protein.
  
     0.554
Caci_6359
KEGG: saq:Sare_0556 hypothetical protein.
  
     0.552
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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