STRINGSTRING
Plav_2499 Plav_2499 Plav_2500 Plav_2500 Plav_2502 Plav_2502 Plav_2498 Plav_2498 Plav_2501 Plav_2501 Plav_2497 Plav_2497 Plav_2504 Plav_2504 Plav_2503 Plav_2503
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2499PFAM: protein of unknown function DUF423; KEGG: psa:PST_3985 uncharacterized small membrane protein. (128 aa)    
Predicted Functional Partners:
Plav_2500
KEGG: hne:HNE_2926 hypothetical protein.
       0.516
Plav_2502
KEGG: hypothetical protein.
       0.505
Plav_2498
PFAM: FAD dependent oxidoreductase; KEGG: hne:HNE_2414 hypothetical protein.
       0.503
Plav_2501
PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein.
       0.500
Plav_2497
PFAM: alpha/beta hydrolase fold; KEGG: epoxide hydrolase.
       0.416
Plav_2504
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bra:BRADO4030 putative TauD/TfdA family dioxygenase.
  
    0.411
Plav_2503
Major facilitator superfamily MFS_1; PFAM: proton/sugar symporter LacY; nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: mag:amb2280 permease of the major facilitator superfamily.
       0.404
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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