STRINGSTRING
Daci_2088 Daci_2088 Daci_2087 Daci_2087 rpsN rpsN Daci_2086 Daci_2086 dksA dksA folE2 folE2 rpmB rpmB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Daci_2088PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pst:PSPTO_4198 cobalamin synthesis protein/P47K family protein. (364 aa)    
Predicted Functional Partners:
Daci_2087
KEGG: pfl:PFL_1368 conserved hypothetical protein.
       0.708
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.548
Daci_2086
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: psb:Psyr_3939 regulatory protein, GntR.
       0.538
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.467
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.465
rpmB
PFAM: ribosomal protein L28; KEGG: ajs:Ajs_3384 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.444
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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