STRINGSTRING
sdiA sdiA barA barA pvpS pvpS arcB arcB fklB fklB hnr hnr
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdiAPutative transcriptional regulator. (236 aa)    
Predicted Functional Partners:
barA
Signal transduction histidine-protein kinase.
  
 
 0.943
pvpS
Pvp sensor (virulence sensor protein bvgs).
   
 
 0.794
arcB
Aerobic respiration control sensor protein.
  
 
 0.652
fklB
Fkbp-type 22 kda peptidyl-prolyl cis-trans isomerase (ppiase (rotamase) (fkbp22).
       0.441
hnr
Signal transduction response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.
   
 
 0.401
Your Current Organism:
Photorhabdus asymbiotica
NCBI taxonomy Id: 291112
Other names: ATCC 43950, CIP 106331, DSM 15149, P. asymbiotica, strain 3265-86
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