STRINGSTRING
Snas_3897 Snas_3897 Snas_3896 Snas_3896 Snas_3890 Snas_3890 Snas_3898 Snas_3898 Snas_3899 Snas_3899 Snas_3017 Snas_3017 Snas_3891 Snas_3891 Snas_3894 Snas_3894 Snas_3895 Snas_3895
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
Snas_3897Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl01_4237 AraC family transcriptional regulator. (327 aa)    
Predicted Functional Partners:
Snas_3896
PFAM: GCN5-related N-acetyltransferase; KEGG: rlt:Rleg2_4258 GCN5-related N- acetyltransferase.
       0.668
Snas_3890
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: pmy:Pmen_2590 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase.
 
     0.667
Snas_3898
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_B2731 alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.
 
    0.640
Snas_3899
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pfo:Pfl01_4696 acyl-CoA dehydrogenase-like.
       0.577
Snas_3017
PFAM: MaoC domain protein dehydratase; KEGG: par:Psyc_1308 hypothetical protein.
  
     0.443
Snas_3891
KEGG: maq:Maqu_2489 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.427
Snas_3894
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mes:Meso_0085 peptidoglycan-binding domain 1.
       0.417
Snas_3895
Hypothetical protein.
       0.417
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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