STRINGSTRING
AEF21499.1 AEF21499.1 AEF21498.1 AEF21498.1 AEF21500.1 AEF21500.1 rpmE rpmE rpsL rpsL rpmJ rpmJ rplO rplO rpsT rpsT rpsQ rpsQ rpsU rpsU rpsE rpsE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF21499.1KEGG: pfo:Pfl01_4415 cold-shock DNA-binding protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein. (200 aa)    
Predicted Functional Partners:
AEF21498.1
Transposase; Manually curated; KEGG: pst:PSPTO_4510 ISPsy11, transposase OrfA.
       0.523
AEF21500.1
PFAM: Ferritin/Dps protein; KEGG: pmy:Pmen_1265 ferritin, Dps family protein; Belongs to the Dps family.
  
  
 0.510
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
 
 0.490
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.477
rpmJ
PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: pmy:Pmen_3888 50S ribosomal protein L36; HAMAP: Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.464
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.440
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.427
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.424
rpsU
TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: psa:PST_0714 30S ribosomal protein S21; PFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.424
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
 
 0.422
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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