STRINGSTRING
Cpin_6190 Cpin_6190 Cpin_6193 Cpin_6193 Cpin_0741 Cpin_0741 Cpin_1052 Cpin_1052 Cpin_6917 Cpin_6917 Cpin_0895 Cpin_0895 Cpin_4667 Cpin_4667 Cpin_5454 Cpin_5454 Cpin_1323 Cpin_1323 lspA lspA Cpin_6968 Cpin_6968
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_6190KEGG: pfo:Pfl01_5132 organic solvent tolerance protein. (926 aa)    
Predicted Functional Partners:
Cpin_6193
PFAM: OstA family protein; protein of unknown function DUF1239.
 
 
 0.926
Cpin_0741
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hypothetical protein.
 
  
 0.821
Cpin_1052
PFAM: surface antigen variable number repeat protein; surface antigen (D15); KEGG: hch:HCH_05243 outer membrane protein/protective antigen OMA87.
  
  
 0.795
Cpin_6917
PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00415 permease.
 
 
 0.783
Cpin_0895
Hypothetical protein.
  
     0.770
Cpin_4667
KEGG: gsu:GSU1489 hypothetical protein.
  
     0.767
Cpin_5454
SMART: Tetratricopeptide domain protein; KEGG: GK17986 gene product from transcript GK17986- RA.
 
   
 0.763
Cpin_1323
PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00414 permease.
 
 
 0.754
lspA
Lipoprotein signal peptidase-like protein; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
   
 0.749
Cpin_6968
TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: met:M446_6695 putative lipoprotein.
 
  
 0.735
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.