STRINGSTRING
Pmen_0728 Pmen_0728 Pmen_0729 Pmen_0729 Pmen_0730 Pmen_0730 Pmen_1194 Pmen_1194 Pmen_2992 Pmen_2992
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_0728Membrane protein-like protein. (151 aa)    
Predicted Functional Partners:
Pmen_0729
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.
       0.704
Pmen_0730
Alpha-2-macroglobulin domain protein; Protects the bacterial cell from host peptidases.
       0.543
Pmen_1194
Hypothetical protein.
  
     0.484
Pmen_2992
Hypothetical protein.
  
     0.416
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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