STRINGSTRING
Pmen_0729 Pmen_0729 Pmen_0728 Pmen_0728 Pmen_1854 Pmen_1854 Pmen_0730 Pmen_0730 Pmen_0316 Pmen_0316 Pmen_2869 Pmen_2869 Pmen_0731 Pmen_0731 Pmen_0459 Pmen_0459 Pmen_1311 Pmen_1311 Pmen_1451 Pmen_1451 Pmen_1522 Pmen_1522
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_0729TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE. (449 aa)    
Predicted Functional Partners:
Pmen_0728
Membrane protein-like protein.
       0.704
Pmen_1854
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.662
Pmen_0730
Alpha-2-macroglobulin domain protein; Protects the bacterial cell from host peptidases.
       0.606
Pmen_0316
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase.
  
  
 0.506
Pmen_2869
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding.
  
  
 0.497
Pmen_0731
PFAM: protein of unknown function DUF1568.
  
    0.451
Pmen_0459
D-erythrose-4-phosphate dehydrogenase; Catalyzes the NAD-dependent conversion of D-erythrose 4- phosphate to 4-phosphoerythronate.
   
  
 0.444
Pmen_1311
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.444
Pmen_1451
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.444
Pmen_1522
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.444
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.