STRINGSTRING
Pmen_0735 Pmen_0735 Pmen_3540 Pmen_3540 Pmen_3098 Pmen_3098 Pmen_0836 Pmen_0836 Pmen_1798 Pmen_1798 Pmen_3107 Pmen_3107 Pmen_0254 Pmen_0254 Pmen_3003 Pmen_3003 Pmen_1808 Pmen_1808 Pmen_1320 Pmen_1320 Pmen_3726 Pmen_3726
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_0735TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein. (375 aa)    
Predicted Functional Partners:
Pmen_3540
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein.
 
 
0.933
Pmen_3098
Diguanylate phosphodiesterase; PFAM: EAL domain protein.
  
 0.832
Pmen_0836
PFAM: response regulator receiver.
 
  
 0.823
Pmen_1798
Diguanylate phosphodiesterase; PFAM: EAL domain protein.
  
 0.819
Pmen_3107
Diguanylate phosphodiesterase; PFAM: EAL domain protein.
  
 0.811
Pmen_0254
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein.
 
 0.809
Pmen_3003
Diguanylate phosphodiesterase; PFAM: EAL domain protein.
    0.797
Pmen_1808
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein.
 
    0.775
Pmen_1320
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein.
    0.705
Pmen_3726
Putative PAS/PAC sensor protein; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
      0.666
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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