STRINGSTRING
Pmen_2304 Pmen_2304 Pmen_2305 Pmen_2305 Pmen_2306 Pmen_2306 Pmen_2254 Pmen_2254
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_2304PFAM: Hemerythrin HHE cation binding domain protein. (155 aa)    
Predicted Functional Partners:
Pmen_2305
Hypothetical protein.
       0.559
Pmen_2306
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
     0.494
Pmen_2254
Hypothetical protein.
 
     0.475
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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