STRINGSTRING
Pmen_2309 Pmen_2309 Pmen_2317 Pmen_2317 Pmen_2315 Pmen_2315 Pmen_2314 Pmen_2314 Pmen_2327 Pmen_2327 Pmen_2310 Pmen_2310 Pmen_2312 Pmen_2312 Pmen_2311 Pmen_2311 Pmen_2318 Pmen_2318 Pmen_2313 Pmen_2313 Pmen_2319 Pmen_2319
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_2309PFAM: 17 kDa surface antigen. (298 aa)    
Predicted Functional Partners:
Pmen_2317
PFAM: OmpA/MotB domain protein.
  
 
 0.846
Pmen_2315
Conserved hypothetical protein.
  
  
 0.840
Pmen_2314
PFAM: protein phosphatase 2C domain protein.
  
  
 0.835
Pmen_2327
PFAM: virulence protein, SciE type.
  
    0.798
Pmen_2310
PFAM: protein of unknown function DUF323.
  
  
 0.792
Pmen_2312
PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.775
Pmen_2311
PFAM: protein of unknown function DUF214.
  
 
 0.711
Pmen_2318
PFAM: protein of unknown function DUF876.
  
  
 0.703
Pmen_2313
PFAM: protein kinase; tyrosine protein kinase; SMART: von Willebrand factor, type A; serine/threonine protein kinase.
  
  
 0.695
Pmen_2319
Conserved hypothetical protein.
  
  
 0.653
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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