STRINGSTRING
Pmen_2317 Pmen_2317 Pmen_2315 Pmen_2315 Pmen_2319 Pmen_2319 Pmen_2318 Pmen_2318 Pmen_2323 Pmen_2323 Pmen_2316 Pmen_2316 Pmen_2322 Pmen_2322 Pmen_2327 Pmen_2327 Pmen_2328 Pmen_2328 Pmen_2314 Pmen_2314 Pmen_2329 Pmen_2329
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_2317PFAM: OmpA/MotB domain protein. (453 aa)    
Predicted Functional Partners:
Pmen_2315
Conserved hypothetical protein.
 
  
 0.992
Pmen_2319
Conserved hypothetical protein.
 
  
 0.992
Pmen_2318
PFAM: protein of unknown function DUF876.
 
  
 0.990
Pmen_2323
PFAM: protein of unknown function DUF877.
 
  
 0.989
Pmen_2316
PFAM: ImcF domain protein; protein of unknown function DUF1215.
 
 
 0.985
Pmen_2322
PFAM: uncharacterised conserved protein UCP028301.
 
  
 0.980
Pmen_2327
PFAM: virulence protein, SciE type.
 
  
 0.980
Pmen_2328
PFAM: GPW/gp25 family protein.
 
  
 0.978
Pmen_2314
PFAM: protein phosphatase 2C domain protein.
 
  
 0.974
Pmen_2329
PFAM: protein of unknown function DUF879.
 
  
 0.974
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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