STRINGSTRING
Pmen_4090 Pmen_4090 Pmen_0057 Pmen_0057 Pmen_1611 Pmen_1611 Pmen_0257 Pmen_0257 Pmen_4376 Pmen_4376 Pmen_1181 Pmen_1181 aroA aroA Pmen_0910 Pmen_0910 Pmen_0207 Pmen_0207 Pmen_2849 Pmen_2849 xpt xpt
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_4090Amidophosphoribosyltransferase-like protein. (246 aa)    
Predicted Functional Partners:
Pmen_0057
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.
 
 
 0.932
Pmen_1611
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein.
 
  
 0.923
Pmen_0257
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
  
 0.843
Pmen_4376
PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.834
Pmen_1181
PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.828
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
   
  
 0.807
Pmen_0910
PFAM: protein of unknown function UPF0102; Belongs to the UPF0102 family.
 
    0.788
Pmen_0207
TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.720
Pmen_2849
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; Belongs to the flagella basal body rod proteins family.
   
   0.720
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
    0.713
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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