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Pmen_4447 Pmen_4447 Pmen_4448 Pmen_4448 Pmen_4449 Pmen_4449 Pmen_2869 Pmen_2869 Pmen_4446 Pmen_4446 Pmen_1953 Pmen_1953 Pmen_4451 Pmen_4451 Pmen_4450 Pmen_4450 Pmen_2618 Pmen_2618 Pmen_3654 Pmen_3654
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_4447Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type. (342 aa)    
Predicted Functional Partners:
Pmen_4448
PFAM: Antibiotic biosynthesis monooxygenase.
       0.773
Pmen_4449
Hypothetical protein.
       0.570
Pmen_2869
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding.
 
   
 0.558
Pmen_4446
TIGRFAM: TRAP transporter solute receptor, TAXI family.
  
    0.520
Pmen_1953
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.463
Pmen_4451
TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein.
  
 
 0.434
Pmen_4450
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.416
Pmen_2618
Metal-dependent hydrolase-like protein.
  
     0.410
Pmen_3654
Metal-dependent hydrolase-like protein.
  
     0.404
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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