STRINGSTRING
Dret_0346 Dret_0346 Dret_0345 Dret_0345 Dret_0344 Dret_0344 Dret_0347 Dret_0347 Dret_0354 Dret_0354 Dret_0343 Dret_0343 Dret_1317 Dret_1317 acpP acpP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0346KEGG: ppg:PputGB1_0325 hypothetical protein. (159 aa)    
Predicted Functional Partners:
Dret_0345
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: csa:Csal_3173 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
   
 0.995
Dret_0344
PFAM: protein of unknown function DUF849; KEGG: bxe:Bxe_B0827 hypothetical protein.
 
  
 0.930
Dret_0347
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain; KEGG: pap:PSPA7_6176 putative transcriptional regulator.
  
     0.639
Dret_0354
PFAM: peptidase M24; KEGG: csa:Csal_2884 peptidase M24.
 
    0.554
Dret_0343
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0145 putative glycine betaine/L- proline ABC transporter, solute-binding protein.
 
     0.519
Dret_1317
PFAM: Acyl transferase; KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase.
  
 
 0.500
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.459
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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