STRINGSTRING
Rmar_1425 Rmar_1425 Rmar_0688 Rmar_0688 Rmar_2273 Rmar_2273 Rmar_1424 Rmar_1424 Rmar_2691 Rmar_2691 Rmar_2789 Rmar_2789 Rmar_1481 Rmar_1481 Rmar_2796 Rmar_2796 Rmar_0455 Rmar_0455 Rmar_2031 Rmar_2031 Rmar_1672 Rmar_1672
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmar_1425PFAM: DoxX family protein; KEGG: ppg:PputGB1_1915 DoxX family protein. (154 aa)    
Predicted Functional Partners:
Rmar_0688
PFAM: RagB/SusD domain protein; Tetratricopeptide TPR_4.
  
     0.557
Rmar_2273
KEGG: hch:HCH_04629 hypothetical protein.
 
     0.553
Rmar_1424
PFAM: NUDIX hydrolase; KEGG: hydrolase protein; Belongs to the Nudix hydrolase family.
       0.518
Rmar_2691
PFAM: protein of unknown function DUF721; KEGG: ppd:Ppro_1102 hypothetical protein.
  
     0.493
Rmar_2789
KEGG: sus:Acid_7383 Tat pathway signal sequence domain-containing protein.
  
     0.490
Rmar_1481
PFAM: RagB/SusD domain protein.
  
     0.488
Rmar_2796
KEGG: hypothetical protein.
  
     0.484
Rmar_0455
KEGG: sus:Acid_3670 hypothetical protein.
  
     0.476
Rmar_2031
SMART: zinc finger RanBP2-type; KEGG: bph:Bphy_3808 TPR repeat-containing protein.
  
     0.472
Rmar_1672
Hypothetical protein.
  
     0.453
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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