STRINGSTRING
PC1_3922 PC1_3922 PC1_3743 PC1_3743 PC1_4180 PC1_4180 PC1_3963 PC1_3963 PC1_1550 PC1_1550 PC1_3921 PC1_3921 PC1_3923 PC1_3923
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_3922PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppg:PputGB1_2356 lysine exporter protein LysE/YggA. (204 aa)    
Predicted Functional Partners:
PC1_3743
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA3951 LysE-type translocator.
  
    0.783
PC1_4180
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA0067 amino acid transporter LysE.
  
    0.783
PC1_3963
TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA4171 threonine efflux system.
  
    0.780
PC1_1550
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: eca:ECA2788 LysE family translocator.
  
    0.779
PC1_3921
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_4575 transcriptional regulator.
       0.519
PC1_3923
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: eca:ECA4131 aminoglycoside/multidrug efflux system.
       0.480
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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