Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFY17221.1 | def1 | PputUW4_00012 | PputUW4_00016 | Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.559 |
| AFY17221.1 | fmt | PputUW4_00012 | PputUW4_00015 | Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.520 |
| AFY17221.1 | rsmB | PputUW4_00012 | PputUW4_00014 | Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.520 |
| AFY17221.1 | trkA | PputUW4_00012 | PputUW4_00013 | Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. | Potassium transporter peripheral membrane component; [P] COG0569 K+ transport systems, NAD-binding component. | 0.549 |
| AFY21126.1 | trkA | PputUW4_03934 | PputUW4_00013 | TrkH family potassium uptake protein; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | Potassium transporter peripheral membrane component; [P] COG0569 K+ transport systems, NAD-binding component. | 0.959 |
| def1 | AFY17221.1 | PputUW4_00016 | PputUW4_00012 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. | 0.559 |
| def1 | fmt | PputUW4_00016 | PputUW4_00015 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.959 |
| def1 | rsmB | PputUW4_00016 | PputUW4_00014 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.777 |
| def1 | trkA | PputUW4_00016 | PputUW4_00013 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Potassium transporter peripheral membrane component; [P] COG0569 K+ transport systems, NAD-binding component. | 0.636 |
| fmt | AFY17221.1 | PputUW4_00015 | PputUW4_00012 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. | 0.520 |
| fmt | def1 | PputUW4_00015 | PputUW4_00016 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.959 |
| fmt | ppkB | PputUW4_00015 | PputUW4_03641 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | [RTKL] COG0515 Serine/threonine protein kinase. | 0.869 |
| fmt | purL | PputUW4_00015 | PputUW4_00963 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.421 |
| fmt | rsmB | PputUW4_00015 | PputUW4_00014 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.982 |
| fmt | trkA | PputUW4_00015 | PputUW4_00013 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Potassium transporter peripheral membrane component; [P] COG0569 K+ transport systems, NAD-binding component. | 0.821 |
| hemD | trkA | PputUW4_05274 | PputUW4_00013 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Potassium transporter peripheral membrane component; [P] COG0569 K+ transport systems, NAD-binding component. | 0.597 |
| moaE1 | moaE2 | PputUW4_03066 | PputUW4_04465 | [H] COG0314 Molybdopterin converting factor, large subunit. | Molybdopterin biosynthesis MoaE; [H] COG0314 Molybdopterin converting factor, large subunit. | 0.902 |
| moaE1 | trkA | PputUW4_03066 | PputUW4_00013 | [H] COG0314 Molybdopterin converting factor, large subunit. | Potassium transporter peripheral membrane component; [P] COG0569 K+ transport systems, NAD-binding component. | 0.565 |
| moaE2 | moaE1 | PputUW4_04465 | PputUW4_03066 | Molybdopterin biosynthesis MoaE; [H] COG0314 Molybdopterin converting factor, large subunit. | [H] COG0314 Molybdopterin converting factor, large subunit. | 0.902 |
| moaE2 | trkA | PputUW4_04465 | PputUW4_00013 | Molybdopterin biosynthesis MoaE; [H] COG0314 Molybdopterin converting factor, large subunit. | Potassium transporter peripheral membrane component; [P] COG0569 K+ transport systems, NAD-binding component. | 0.565 |
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