STRINGSTRING
AFY17226.1 AFY17226.1 pilQ pilQ pilN pilN pilO pilO pilM pilM pilP pilP AFY21134.1 AFY21134.1 AFY18447.1 AFY18447.1 AFY20637.1 AFY20637.1 trpS trpS fimT1 fimT1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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[Homology]
Score
AFY17226.1[S] COG1652 Uncharacterized protein containing LysM domain. (274 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus biogenesis protein PilQ; [U] COG4964 Flp pilus assembly protein, secretin CpaC.
 
 
 
 0.915
pilN
Type 4 fimbrial biogenesis protein PilN; [N] COG3166 Tfp pilus assembly protein PilN.
  
 
   0.886
pilO
Type 4 fimbrial biogenesis protein PilO; [N] COG3167 Tfp pilus assembly protein PilO.
 
 
   0.886
pilM
[N] COG4972 Tfp pilus assembly protein, ATPase PilM.
  
 
   0.883
pilP
Type 4 fimbrial biogenesis protein PilP; [N] COG3168 Tfp pilus assembly protein PilP.
 
 
   0.872
AFY21134.1
[NU] COG3170 Tfp pilus assembly protein FimV.
 
   
 0.777
AFY18447.1
Hypothetical protein; [S] COG3422 Uncharacterized conserved protein.
 
   0.770
AFY20637.1
LysM domain-containing protein; [NU] COG3170 Tfp pilus assembly protein FimV.
 
   
 0.761
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.746
fimT1
Type IV pilus related protein; [NU] COG4970 Tfp pilus assembly protein FimT.
  
   
 0.728
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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