STRINGSTRING
AFY17232.1 AFY17232.1 petB petB nuoM nuoM sbcD sbcD betC betC AFY18188.1 AFY18188.1 AFY20886.1 AFY20886.1 AFY17233.1 AFY17233.1 AFY17252.1 AFY17252.1 AFY20290.1 AFY20290.1 phaAB phaAB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AFY17232.1[P] COG0659 Sulfate permease and related transporters (MFS superfamily). (522 aa)    
Predicted Functional Partners:
petB
Cytochrome b/b6-like protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.539
nuoM
[C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
  
 
 0.538
sbcD
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.518
betC
Choline-sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.
     
 0.509
AFY18188.1
Hypothetical protein.
    
 
 0.503
AFY20886.1
Ankyrin; [R] COG0666 FOG: Ankyrin repeat.
    
 
 0.503
AFY17233.1
Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
       0.492
AFY17252.1
[T] COG2365 Protein tyrosine/serine phosphatase.
   
   0.451
AFY20290.1
[T] COG2365 Protein tyrosine/serine phosphatase.
   
   0.451
phaAB
K(+)/H(+) antiporter subunit A/B; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.
 
  
 0.442
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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