Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17253.1 | AFY17254.1 | PputUW4_00044 | PputUW4_00045 | Hypothetical protein. | Radical SAM family protein; [L] COG1533 DNA repair photolyase. | 0.507 |
AFY17254.1 | AFY17253.1 | PputUW4_00045 | PputUW4_00044 | Radical SAM family protein; [L] COG1533 DNA repair photolyase. | Hypothetical protein. | 0.507 |
AFY17254.1 | AFY17293.1 | PputUW4_00045 | PputUW4_00084 | Radical SAM family protein; [L] COG1533 DNA repair photolyase. | Nucleoside recognition domain-containing protein; [S] COG0700 Uncharacterized membrane protein. | 0.452 |
AFY17254.1 | cynT | PputUW4_00045 | PputUW4_00046 | Radical SAM family protein; [L] COG1533 DNA repair photolyase. | Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. | 0.510 |
AFY17293.1 | AFY17254.1 | PputUW4_00084 | PputUW4_00045 | Nucleoside recognition domain-containing protein; [S] COG0700 Uncharacterized membrane protein. | Radical SAM family protein; [L] COG1533 DNA repair photolyase. | 0.452 |
cynT | AFY17254.1 | PputUW4_00046 | PputUW4_00045 | Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. | Radical SAM family protein; [L] COG1533 DNA repair photolyase. | 0.510 |