STRINGSTRING
AFY17278.1 AFY17278.1 thrB thrB AFY18813.1 AFY18813.1 AFY18814.1 AFY18814.1 AFY21398.1 AFY21398.1 polA polA AFY21335.1 AFY21335.1 AFY18281.1 AFY18281.1 AFY21137.1 AFY21137.1 AFY20637.1 AFY20637.1 ccmD ccmD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY17278.1Hypothetical protein. (96 aa)    
Predicted Functional Partners:
thrB
[R] COG2334 Putative homoserine kinase type II (protein kinase fold); Belongs to the pseudomonas-type ThrB family.
 
    0.806
AFY18813.1
Peptidase; [S] COG3212 Predicted membrane protein.
  
    0.706
AFY18814.1
Peptidase; [S] COG3212 Predicted membrane protein.
  
    0.706
AFY21398.1
Peptidase; [S] COG3212 Predicted membrane protein.
  
    0.706
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.669
AFY21335.1
Hypothetical protein; [M] COG5581 Predicted glycosyltransferase.
  
     0.628
AFY18281.1
Hypothetical protein.
  
     0.556
AFY21137.1
YgfB and YecA; [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; Belongs to the UPF0149 family.
  
     0.531
AFY20637.1
LysM domain-containing protein; [NU] COG3170 Tfp pilus assembly protein FimV.
  
    0.512
ccmD
Cytochrome c-type biogenesis protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.490
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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