STRINGSTRING
pleD pleD AFY17287.1 AFY17287.1 AFY17284.1 AFY17284.1 AFY19619.1 AFY19619.1 dsbA dsbA AFY19922.1 AFY19922.1 AFY22249.1 AFY22249.1 AFY18786.1 AFY18786.1 gacS gacS AFY17600.1 AFY17600.1 AFY19821.1 AFY19821.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
pleDDiguanylate cyclase (GGDEF) domain protein; [T] COG2199 FOG: GGDEF domain. (659 aa)    
Predicted Functional Partners:
AFY17287.1
EAL domain-containing protein; [T] COG2200 FOG: EAL domain.
 
   
 0.877
AFY17284.1
Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.
  
    0.842
AFY19619.1
Diguanylate phosphodiesterase; [T] COG2200 FOG: EAL domain.
 
  
 0.831
dsbA
Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.776
AFY19922.1
Hypothetical protein; [T] COG2200 FOG: EAL domain.
 
   
 0.775
AFY22249.1
Response regulator/sensory box/GGDEF domain/EAL domain-containing protein; [T] COG2200 FOG: EAL domain; COG2199 FOG: GGDEF domain.
 
 
0.629
AFY18786.1
Hpt sensor hybrid histidine kinase; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
 0.592
gacS
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.564
AFY17600.1
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.
 
 
0.561
AFY19821.1
Sensory box protein; [T] COG2200 FOG: EAL domain.
 
 
0.560
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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