amiD1 protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

amiD1

N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression. (259 aa)

Predicted Functional Partners:

AFY17287.1

0.595

AFY17284.1

0.558

pleD

0.558

dsbA

0.538

pncB

0.422

amiC

0.421

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17284.1	AFY17287.1	PputUW4_00075	PputUW4_00078	Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.	EAL domain-containing protein; [T] COG2200 FOG: EAL domain.	0.482
AFY17284.1	amiD1	PputUW4_00075	PputUW4_00077	Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	0.558
AFY17284.1	dsbA	PputUW4_00075	PputUW4_00074	Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.	Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.	0.776
AFY17284.1	pleD	PputUW4_00075	PputUW4_00076	Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.	Diguanylate cyclase (GGDEF) domain protein; [T] COG2199 FOG: GGDEF domain.	0.842
AFY17287.1	AFY17284.1	PputUW4_00078	PputUW4_00075	EAL domain-containing protein; [T] COG2200 FOG: EAL domain.	Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.	0.482
AFY17287.1	amiD1	PputUW4_00078	PputUW4_00077	EAL domain-containing protein; [T] COG2200 FOG: EAL domain.	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	0.595
AFY17287.1	dsbA	PputUW4_00078	PputUW4_00074	EAL domain-containing protein; [T] COG2200 FOG: EAL domain.	Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.	0.469
AFY17287.1	pleD	PputUW4_00078	PputUW4_00076	EAL domain-containing protein; [T] COG2200 FOG: EAL domain.	Diguanylate cyclase (GGDEF) domain protein; [T] COG2199 FOG: GGDEF domain.	0.877
amiC	amiD1	PputUW4_00449	PputUW4_00077	[M] COG0860 N-acetylmuramoyl-L-alanine amidase.	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	0.421
amiD1	AFY17284.1	PputUW4_00077	PputUW4_00075	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.	0.558
amiD1	AFY17287.1	PputUW4_00077	PputUW4_00078	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	EAL domain-containing protein; [T] COG2200 FOG: EAL domain.	0.595
amiD1	amiC	PputUW4_00077	PputUW4_00449	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	[M] COG0860 N-acetylmuramoyl-L-alanine amidase.	0.421
amiD1	dsbA	PputUW4_00077	PputUW4_00074	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.	0.538
amiD1	pleD	PputUW4_00077	PputUW4_00076	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	Diguanylate cyclase (GGDEF) domain protein; [T] COG2199 FOG: GGDEF domain.	0.558
amiD1	pncB	PputUW4_00077	PputUW4_00477	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.	0.422
dsbA	AFY17284.1	PputUW4_00074	PputUW4_00075	Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.	Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.	0.776
dsbA	AFY17287.1	PputUW4_00074	PputUW4_00078	Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.	EAL domain-containing protein; [T] COG2200 FOG: EAL domain.	0.469
dsbA	amiD1	PputUW4_00074	PputUW4_00077	Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.	N-acetylmuramoyl-L-alanine amidase; [V] COG3023 Negative regulator of beta-lactamase expression.	0.538
dsbA	pleD	PputUW4_00074	PputUW4_00076	Thiol:disulfide interchange protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.	Diguanylate cyclase (GGDEF) domain protein; [T] COG2199 FOG: GGDEF domain.	0.776
pleD	AFY17284.1	PputUW4_00076	PputUW4_00075	Diguanylate cyclase (GGDEF) domain protein; [T] COG2199 FOG: GGDEF domain.	Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.	0.842