STRINGSTRING
AFY17321.1 AFY17321.1 AFY17320.1 AFY17320.1 AFY18453.1 AFY18453.1 AFY18786.1 AFY18786.1 AFY22249.1 AFY22249.1 AFY17358.1 AFY17358.1 AFY20086.1 AFY20086.1 AFY20463.1 AFY20463.1 AFY19949.1 AFY19949.1 gacS gacS AFY21139.1 AFY21139.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Textmining
[Homology]
Score
AFY17321.1GGDEF/EAL domain-containing protein; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain. (648 aa)    
Predicted Functional Partners:
AFY17320.1
Hypothetical protein; [S] COG3672 Predicted periplasmic protein.
 
 
 0.956
AFY18453.1
Diguanylate cyclase with PAS/PAC and GAF sensors; [T] COG2199 FOG: GGDEF domain.
 
 
 0.901
AFY18786.1
Hpt sensor hybrid histidine kinase; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
  
 0.887
AFY22249.1
Response regulator/sensory box/GGDEF domain/EAL domain-containing protein; [T] COG2200 FOG: EAL domain; COG2199 FOG: GGDEF domain.
 
 
0.871
AFY17358.1
Diguanylate cyclase; [T] COG2199 FOG: GGDEF domain.
 
 
 0.868
AFY20086.1
Hypothetical protein; [T] COG2199 FOG: GGDEF domain.
 
  
 0.858
AFY20463.1
PAS/PAC sensor-containing diguanylate cyclase; [T] COG2199 FOG: GGDEF domain; COG2202 FOG: PAS/PAC domain.
 
 
 0.857
AFY19949.1
[T] COG0642 Signal transduction histidine kinase.
  
  
 0.851
gacS
[T] COG0642 Signal transduction histidine kinase.
  
  
 0.851
AFY21139.1
Hypothetical protein; [S] COG3672 Predicted periplasmic protein.
 
 
 0.837
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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