STRINGSTRING
AFY17369.1 AFY17369.1 AFY17368.1 AFY17368.1 AFY17842.1 AFY17842.1 AFY19086.1 AFY19086.1 vapC vapC crp crp AFY17422.1 AFY17422.1 AFY17835.1 AFY17835.1 AFY17466.1 AFY17466.1 AFY17421.1 AFY17421.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY17369.1[R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. (410 aa)    
Predicted Functional Partners:
AFY17368.1
[K] COG1396 Predicted transcriptional regulators.
  
 
 0.863
AFY17842.1
[K] COG1396 Predicted transcriptional regulators.
   
 
 0.699
AFY19086.1
[K] COG1476 Predicted transcriptional regulators.
   
 
 0.645
vapC
Virulence-associated protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   
 0.516
crp
Cyclic nucleotide-binding protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
       0.507
AFY17422.1
Helix-turn-helix family protein.
 
 
 0.466
AFY17835.1
Hypothetical protein.
  
     0.431
AFY17466.1
Hypothetical protein.
  
     0.409
AFY17421.1
HipA domain-containing protein; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
 
   
 0.402
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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