Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17368.1 | AFY17369.1 | PputUW4_00160 | PputUW4_00161 | [K] COG1396 Predicted transcriptional regulators. | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | 0.863 |
AFY17368.1 | crp | PputUW4_00160 | PputUW4_00159 | [K] COG1396 Predicted transcriptional regulators. | Cyclic nucleotide-binding protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. | 0.518 |
AFY17369.1 | AFY17368.1 | PputUW4_00161 | PputUW4_00160 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | [K] COG1396 Predicted transcriptional regulators. | 0.863 |
AFY17369.1 | AFY17421.1 | PputUW4_00161 | PputUW4_00213 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | HipA domain-containing protein; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | 0.402 |
AFY17369.1 | AFY17422.1 | PputUW4_00161 | PputUW4_00214 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | Helix-turn-helix family protein. | 0.466 |
AFY17369.1 | AFY17466.1 | PputUW4_00161 | PputUW4_00258 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | Hypothetical protein. | 0.409 |
AFY17369.1 | AFY17835.1 | PputUW4_00161 | PputUW4_00627 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | Hypothetical protein. | 0.431 |
AFY17369.1 | AFY17842.1 | PputUW4_00161 | PputUW4_00634 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | [K] COG1396 Predicted transcriptional regulators. | 0.699 |
AFY17369.1 | AFY19086.1 | PputUW4_00161 | PputUW4_01881 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | [K] COG1476 Predicted transcriptional regulators. | 0.645 |
AFY17369.1 | crp | PputUW4_00161 | PputUW4_00159 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | Cyclic nucleotide-binding protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. | 0.507 |
AFY17369.1 | vapC | PputUW4_00161 | PputUW4_00253 | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | Virulence-associated protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | 0.516 |
AFY17421.1 | AFY17369.1 | PputUW4_00213 | PputUW4_00161 | HipA domain-containing protein; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | 0.402 |
AFY17421.1 | AFY17422.1 | PputUW4_00213 | PputUW4_00214 | HipA domain-containing protein; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | Helix-turn-helix family protein. | 0.967 |
AFY17421.1 | AFY17842.1 | PputUW4_00213 | PputUW4_00634 | HipA domain-containing protein; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | [K] COG1396 Predicted transcriptional regulators. | 0.699 |
AFY17421.1 | AFY19086.1 | PputUW4_00213 | PputUW4_01881 | HipA domain-containing protein; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | [K] COG1476 Predicted transcriptional regulators. | 0.645 |
AFY17422.1 | AFY17369.1 | PputUW4_00214 | PputUW4_00161 | Helix-turn-helix family protein. | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | 0.466 |
AFY17422.1 | AFY17421.1 | PputUW4_00214 | PputUW4_00213 | Helix-turn-helix family protein. | HipA domain-containing protein; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | 0.967 |
AFY17466.1 | AFY17369.1 | PputUW4_00258 | PputUW4_00161 | Hypothetical protein. | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | 0.409 |
AFY17466.1 | vapC | PputUW4_00258 | PputUW4_00253 | Hypothetical protein. | Virulence-associated protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | 0.489 |
AFY17835.1 | AFY17369.1 | PputUW4_00627 | PputUW4_00161 | Hypothetical protein. | [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. | 0.431 |
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