STRINGSTRING
atsK atsK sftP sftP pvdD pvdD tauA3 tauA3 atsR atsR ssuD ssuD tauB2 tauB2 sftR sftR pvdI pvdI atsB atsB tauA2 tauA2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atsKAlkylsulfatase; [Q] COG2175 Probable taurine catabolism dioxygenase. (306 aa)    
Predicted Functional Partners:
sftP
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.724
pvdD
[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.704
tauA3
Taurine-binding periplasmic protein; [P] COG4521 ABC-type taurine transport system, periplasmic component.
 
  
 0.703
atsR
Periplasmic aliphatic sulfonates-binding protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.673
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
  
 0.661
tauB2
Taurine transporter ATP-binding subunit; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
  
 0.647
sftR
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
     
 0.642
pvdI
[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.606
atsB
Aliphatic sulfonates ABC transporter permease; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.595
tauA2
[P] COG4521 ABC-type taurine transport system, periplasmic component.
 
  
 0.588
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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