STRINGSTRING
AFY17450.1 AFY17450.1 AFY17449.1 AFY17449.1 AFY18063.1 AFY18063.1 AFY17872.1 AFY17872.1 AFY22486.1 AFY22486.1 vapC vapC AFY22219.1 AFY22219.1 higB higB relE1 relE1 relE2 relE2 oprD1 oprD1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY17450.1[K] COG2944 Predicted transcriptional regulator. (94 aa)    
Predicted Functional Partners:
AFY17449.1
Transcription repressor protein.
     0.981
AFY18063.1
Hypothetical protein; [K] COG2944 Predicted transcriptional regulator.
  
     0.696
AFY17872.1
DNA helicase; [L] COG0210 Superfamily I DNA and RNA helicases.
 
 
 
 0.540
AFY22486.1
[R] COG3093 Plasmid maintenance system antidote protein.
 
   
 0.532
vapC
Virulence-associated protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.531
AFY22219.1
Hypothetical protein; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
 
 
 
 0.521
higB
[R] COG3549 Plasmid maintenance system killer protein.
 
   
 0.473
relE1
Stability cassette protein; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
   
 
 0.445
relE2
Addiction module toxin RelE; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
   
 
 0.445
oprD1
Outer membrane porin D.
       0.439
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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