Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFY17470.1 | AFY17472.1 | PputUW4_00262 | PputUW4_00264 | Fe(2+) trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | AsmA family protein; [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis. | 0.807 |
| AFY17470.1 | AFY17473.1 | PputUW4_00262 | PputUW4_00265 | Fe(2+) trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | Putative acetyltransferase. | 0.625 |
| AFY17470.1 | mutY | PputUW4_00262 | PputUW4_00263 | Fe(2+) trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.827 |
| AFY17472.1 | AFY17470.1 | PputUW4_00264 | PputUW4_00262 | AsmA family protein; [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis. | Fe(2+) trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.807 |
| AFY17472.1 | AFY17473.1 | PputUW4_00264 | PputUW4_00265 | AsmA family protein; [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis. | Putative acetyltransferase. | 0.688 |
| AFY17472.1 | mutY | PputUW4_00264 | PputUW4_00263 | AsmA family protein; [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.813 |
| AFY17473.1 | AFY17470.1 | PputUW4_00265 | PputUW4_00262 | Putative acetyltransferase. | Fe(2+) trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.625 |
| AFY17473.1 | AFY17472.1 | PputUW4_00265 | PputUW4_00264 | Putative acetyltransferase. | AsmA family protein; [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis. | 0.688 |
| AFY17473.1 | mutY | PputUW4_00265 | PputUW4_00263 | Putative acetyltransferase. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.625 |
| birA | mutY | PputUW4_04900 | PputUW4_00263 | Bifunctional protein biotin operon repressor/ biotin-[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.554 |
| birA | xth | PputUW4_04900 | PputUW4_05329 | Bifunctional protein biotin operon repressor/ biotin-[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | [L] COG0708 Exonuclease III. | 0.759 |
| birA | xthA1 | PputUW4_04900 | PputUW4_01773 | Bifunctional protein biotin operon repressor/ biotin-[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | [L] COG0708 Exonuclease III. | 0.759 |
| birA | xthA2 | PputUW4_04900 | PputUW4_03476 | Bifunctional protein biotin operon repressor/ biotin-[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | [L] COG0708 Exonuclease III. | 0.759 |
| dnaN | mutY | PputUW4_00002 | PputUW4_00263 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.585 |
| dnaN | xth | PputUW4_00002 | PputUW4_05329 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | [L] COG0708 Exonuclease III. | 0.724 |
| dnaN | xthA1 | PputUW4_00002 | PputUW4_01773 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | [L] COG0708 Exonuclease III. | 0.724 |
| dnaN | xthA2 | PputUW4_00002 | PputUW4_03476 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | [L] COG0708 Exonuclease III. | 0.724 |
| hemN2 | mutY | PputUW4_05124 | PputUW4_00263 | Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.522 |
| mutY | AFY17470.1 | PputUW4_00263 | PputUW4_00262 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Fe(2+) trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.827 |
| mutY | AFY17472.1 | PputUW4_00263 | PputUW4_00264 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | AsmA family protein; [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis. | 0.813 |
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