opuAA protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

opuAA

[E] COG4175 ABC-type proline/glycine betaine transport system, ATPase component. (276 aa)

Predicted Functional Partners:

opuAB

0.998

AFY22233.1

0.993

AFY17510.1

0.992

AFY21002.1

0.986

AFY17233.1

0.985

AFY17518.1

0.985

AFY22232.1

0.983

AFY22223.1

0.982

AFY19151.1

0.979

AFY21423.1

0.979

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17233.1	AFY17510.1	PputUW4_00024	PputUW4_00302	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.419
AFY17233.1	AFY17518.1	PputUW4_00024	PputUW4_00310	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Choline ABC transporter, periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.414
AFY17233.1	AFY19151.1	PputUW4_00024	PputUW4_01946	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	ABC transporter periplasmic protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.422
AFY17233.1	AFY21002.1	PputUW4_00024	PputUW4_03810	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Glycine/betaine-binding protein precursor; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.692
AFY17233.1	AFY21423.1	PputUW4_00024	PputUW4_04231	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.536
AFY17233.1	AFY22223.1	PputUW4_00024	PputUW4_05033	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.420
AFY17233.1	AFY22232.1	PputUW4_00024	PputUW4_05042	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Glycine betaine/L-proline ABC transporter periplasmic substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.401
AFY17233.1	AFY22233.1	PputUW4_00024	PputUW4_05043	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG4176 ABC-type proline/glycine betaine transport system, permease component.	0.993
AFY17233.1	opuAA	PputUW4_00024	PputUW4_00304	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG4175 ABC-type proline/glycine betaine transport system, ATPase component.	0.985
AFY17233.1	opuAB	PputUW4_00024	PputUW4_00303	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG4176 ABC-type proline/glycine betaine transport system, permease component.	0.991
AFY17510.1	AFY17233.1	PputUW4_00302	PputUW4_00024	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.419
AFY17510.1	AFY17518.1	PputUW4_00302	PputUW4_00310	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Choline ABC transporter, periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.566
AFY17510.1	AFY21002.1	PputUW4_00302	PputUW4_03810	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Glycine/betaine-binding protein precursor; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.547
AFY17510.1	AFY22223.1	PputUW4_00302	PputUW4_05033	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.498
AFY17510.1	AFY22232.1	PputUW4_00302	PputUW4_05042	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Glycine betaine/L-proline ABC transporter periplasmic substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.411
AFY17510.1	AFY22233.1	PputUW4_00302	PputUW4_05043	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG4176 ABC-type proline/glycine betaine transport system, permease component.	0.977
AFY17510.1	opuAA	PputUW4_00302	PputUW4_00304	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG4175 ABC-type proline/glycine betaine transport system, ATPase component.	0.992
AFY17510.1	opuAB	PputUW4_00302	PputUW4_00303	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	[E] COG4176 ABC-type proline/glycine betaine transport system, permease component.	0.997
AFY17518.1	AFY17233.1	PputUW4_00310	PputUW4_00024	Choline ABC transporter, periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Choline ABC transporter periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.414
AFY17518.1	AFY17510.1	PputUW4_00310	PputUW4_00302	Choline ABC transporter, periplasmic binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	Putative histidine transporter substrate-binding protein; [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.	0.566