STRINGSTRING
AFY17615.1 AFY17615.1 AFY17616.1 AFY17616.1 AFY17614.1 AFY17614.1 AFY17613.1 AFY17613.1 AFY17617.1 AFY17617.1 AFY17618.1 AFY17618.1 AFY17612.1 AFY17612.1 rfaP rfaP rfaC rfaC rfaF rfaF rfaG rfaG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY17615.1Mig-14 family protein. (298 aa)    
Predicted Functional Partners:
AFY17616.1
LmbE-like protein.
  
  
 0.846
AFY17614.1
Glycosyl transferases group 1; [M] COG0438 Glycosyltransferase.
  
  
 0.828
AFY17613.1
[O] COG2192 Predicted carbamoyl transferase, NodU family.
     
 0.825
AFY17617.1
Glycosyl transferases group 1 family protein; [M] COG0438 Glycosyltransferase.
  
  
 0.824
AFY17618.1
Glycosyl transferase group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
     
 0.810
AFY17612.1
Hypothetical protein.
       0.500
rfaP
Lipopolysaccharide kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
  
 0.436
rfaC
Lipopolysaccharide heptosyltransferase I; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
  
  
 0.430
rfaF
Lipopolysaccharide heptosyltransferase II; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
  
    0.414
rfaG
Lipopolysaccharide core biosynthesis protein; [M] COG0438 Glycosyltransferase.
     
 0.407
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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