STRINGSTRING
AFY17616.1 AFY17616.1 AFY17614.1 AFY17614.1 AFY17617.1 AFY17617.1 AFY17613.1 AFY17613.1 AFY17615.1 AFY17615.1 AFY17618.1 AFY17618.1 AFY17609.1 AFY17609.1 AFY20935.1 AFY20935.1 algG algG AFY17611.1 AFY17611.1 AFY19805.1 AFY19805.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY17616.1LmbE-like protein. (480 aa)    
Predicted Functional Partners:
AFY17614.1
Glycosyl transferases group 1; [M] COG0438 Glycosyltransferase.
 
  
 0.872
AFY17617.1
Glycosyl transferases group 1 family protein; [M] COG0438 Glycosyltransferase.
 
  
 0.860
AFY17613.1
[O] COG2192 Predicted carbamoyl transferase, NodU family.
 
   
 0.849
AFY17615.1
Mig-14 family protein.
  
  
 0.846
AFY17618.1
Glycosyl transferase group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
     
 0.817
AFY17609.1
Lipopolysaccharide core biosynthesis protein; [RTKL] COG0515 Serine/threonine protein kinase.
 
     0.808
AFY20935.1
Hypothetical protein.
  
   
 0.770
algG
Alginate biosynthesis protein AlgG.
 
     0.761
AFY17611.1
[RTKL] COG0515 Serine/threonine protein kinase.
 
  
 0.759
AFY19805.1
Outer membrane porin.
  
     0.758
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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