Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17752.1 | AFY17753.1 | PputUW4_00544 | PputUW4_00545 | MarC family integral membrane family protein; [U] COG2095 Multiple antibiotic transporter. | Periplasmic sensor hybrid histidine kinase; [T] COG0642 Signal transduction histidine kinase. | 0.646 |
AFY17752.1 | mscS1 | PputUW4_00544 | PputUW4_02045 | MarC family integral membrane family protein; [U] COG2095 Multiple antibiotic transporter. | [M] COG0668 Small-conductance mechanosensitive channel. | 0.436 |
AFY17752.1 | purD | PputUW4_00544 | PputUW4_00546 | MarC family integral membrane family protein; [U] COG2095 Multiple antibiotic transporter. | [F] COG0151 Phosphoribosylamine-glycine ligase; Belongs to the GARS family. | 0.499 |
AFY17753.1 | AFY17752.1 | PputUW4_00545 | PputUW4_00544 | Periplasmic sensor hybrid histidine kinase; [T] COG0642 Signal transduction histidine kinase. | MarC family integral membrane family protein; [U] COG2095 Multiple antibiotic transporter. | 0.646 |
AFY17753.1 | purD | PputUW4_00545 | PputUW4_00546 | Periplasmic sensor hybrid histidine kinase; [T] COG0642 Signal transduction histidine kinase. | [F] COG0151 Phosphoribosylamine-glycine ligase; Belongs to the GARS family. | 0.599 |
mscS1 | AFY17752.1 | PputUW4_02045 | PputUW4_00544 | [M] COG0668 Small-conductance mechanosensitive channel. | MarC family integral membrane family protein; [U] COG2095 Multiple antibiotic transporter. | 0.436 |
purD | AFY17752.1 | PputUW4_00546 | PputUW4_00544 | [F] COG0151 Phosphoribosylamine-glycine ligase; Belongs to the GARS family. | MarC family integral membrane family protein; [U] COG2095 Multiple antibiotic transporter. | 0.499 |
purD | AFY17753.1 | PputUW4_00546 | PputUW4_00545 | [F] COG0151 Phosphoribosylamine-glycine ligase; Belongs to the GARS family. | Periplasmic sensor hybrid histidine kinase; [T] COG0642 Signal transduction histidine kinase. | 0.599 |