STRINGSTRING
cueR cueR cueA cueA copP copP rpoD rpoD copB copB cbpA cbpA dnaJ dnaJ AFY18973.1 AFY18973.1 AFY17788.1 AFY17788.1 copA copA nudE2 nudE2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
cueR[K] COG0789 Predicted transcriptional regulators. (137 aa)    
Predicted Functional Partners:
cueA
Copper-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
 
  
 0.873
copP
Heavy metal transport/detoxification protein; [P] COG2608 Copper chaperone.
 
  
 0.632
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.575
copB
[P] COG3667 Uncharacterized protein involved in copper resistance.
 
  
 0.518
cbpA
Curved DNA-binding protein; [O] COG2214 DnaJ-class molecular chaperone.
  
 
 0.517
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
  
 
 0.517
AFY18973.1
[K] COG0789 Predicted transcriptional regulators.
  
   
 0.493
AFY17788.1
Hypothetical protein.
       0.485
copA
Copper-resistance protein CopA; [Q] COG2132 Putative multicopper oxidases.
 
  
 0.465
nudE2
ADP-ribose diphosphatase NudE; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
   
  
 0.460
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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