STRINGSTRING
copP copP cueA cueA cadA1 cadA1 ccoI ccoI cadA2 cadA2 cueR cueR AFY17790.1 AFY17790.1 AFY17788.1 AFY17788.1 rplN rplN AFY19853.1 AFY19853.1 ppa ppa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copPHeavy metal transport/detoxification protein; [P] COG2608 Copper chaperone. (65 aa)    
Predicted Functional Partners:
cueA
Copper-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
 
 
 0.877
cadA1
Cadmium-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
 
 
 0.775
ccoI
Copper-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
  
 
 0.708
cadA2
Cadmium-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
  
 
 0.708
cueR
[K] COG0789 Predicted transcriptional regulators.
 
  
 0.632
AFY17790.1
Bcr/CflA subfamily drug resistance transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.607
AFY17788.1
Hypothetical protein.
       0.595
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.483
AFY19853.1
[S] COG1937 Uncharacterized protein conserved in bacteria.
  
  
 0.451
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
  
 
 0.449
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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