Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17791.1 | AFY17792.1 | PputUW4_00583 | PputUW4_00584 | Hypothetical protein. | Zinc-containing alcohol dehydrogenase superfamily; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | 0.470 |
AFY17791.1 | AFY19484.1 | PputUW4_00583 | PputUW4_02285 | Hypothetical protein. | GCN5-related N-acetyltransferase; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. | 0.493 |
AFY17792.1 | AFY17791.1 | PputUW4_00584 | PputUW4_00583 | Zinc-containing alcohol dehydrogenase superfamily; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | Hypothetical protein. | 0.470 |
AFY19484.1 | AFY17791.1 | PputUW4_02285 | PputUW4_00583 | GCN5-related N-acetyltransferase; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. | Hypothetical protein. | 0.493 |