STRINGSTRING
AFY17892.1 AFY17892.1 AFY17891.1 AFY17891.1 rnfB rnfB AFY17890.1 AFY17890.1 rnfE rnfE rnfG rnfG rnfD rnfD smpB smpB rnfA rnfA sspB sspB AFY22308.1 AFY22308.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AFY17892.1[S] COG2914 Uncharacterized protein conserved in bacteria; Belongs to the UPF0125 (RnfH) family. (104 aa)    
Predicted Functional Partners:
AFY17891.1
Cyclase/dehydrase; [I] COG2867 Oligoketide cyclase/lipid transport protein.
 
  
 0.925
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
   
 0.814
AFY17890.1
Sodium:neurotransmitter symporter; [R] COG0733 Na+-dependent transporters of the SNF family; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
       0.806
rnfE
Electron transport complex protein rnfE; [C] COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE; Belongs to the NqrDE/RnfAE family.
 
  
 0.750
rnfG
Electron transport complex protein RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
  
 0.690
rnfD
Electron transport complex protein RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
  
 0.655
smpB
ssrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.607
rnfA
Electron transport complex protein RnfA; [C] COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA; Belongs to the NqrDE/RnfAE family.
 
   
 0.526
sspB
[R] COG2969 Stringent starvation protein B.
  
     0.526
AFY22308.1
Hypothetical protein; [S] COG0762 Predicted integral membrane protein.
  
     0.410
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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