STRINGSTRING
nikE nikE nikC nikC nikB nikB nikA1 nikA1 nikD nikD nikA2 nikA2 nikA3 nikA3 AFY22511.1 AFY22511.1 AFY19576.1 AFY19576.1 AFY19575.1 AFY19575.1 AFY20080.1 AFY20080.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikENickel import ATP-binding protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
nikC
Nickel transporter permease; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.999
nikB
Nickel transporter permease; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.998
nikA1
Nickel ABC transporter periplasmic nickel-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.989
nikD
Nickel import ATP-binding protein; [E] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
0.986
nikA2
Nickel ABC transporter periplasmic nickel-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.976
nikA3
Nickel ABC transporter periplasmic nickel-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.973
AFY22511.1
[E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.968
AFY19576.1
[R] COG4174 ABC-type uncharacterized transport system, permease component.
   
 0.614
AFY19575.1
[R] COG4239 ABC-type uncharacterized transport system, permease component.
   
 0.609
AFY20080.1
ABC transporter permease; [R] COG4174 ABC-type uncharacterized transport system, permease component.
   
 0.560
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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