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AFY17963.1 AFY17963.1 maeB maeB garD garD AFY17961.1 AFY17961.1 AFY19618.1 AFY19618.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
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[Homology]
Score
AFY17963.1Auxin efflux carrier; [R] COG0679 Predicted permeases. (313 aa)    
Predicted Functional Partners:
maeB
[C] COG0281 Malic enzyme.
  
  
 0.827
garD
[G] COG2721 Altronate dehydratase.
       0.481
AFY17961.1
D-galactonate transporter; [GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.469
AFY19618.1
Transcriptional regulator.
  
     0.461
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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