STRINGSTRING
lptC lptC AFY17985.1 AFY17985.1 lptA lptA AFY18162.1 AFY18162.1 AFY18161.1 AFY18161.1 kdsC kdsC kdsD kdsD AFY17994.1 AFY17994.1 lptD lptD AFY17993.1 AFY17993.1 AFY17975.1 AFY17975.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
lptCHypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. (190 aa)    
Predicted Functional Partners:
AFY17985.1
ABC transporter family protein; [R] COG1137 ABC-type (unclassified) transport system, ATPase component.
  
 0.998
lptA
OstA family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
 
 
 0.989
AFY18162.1
[R] COG0795 Predicted permeases.
 
 
 0.908
AFY18161.1
Permease YjgP/YjgQ family protein; [R] COG0795 Predicted permeases.
 
 
 0.905
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.903
kdsD
Arabinose 5-phosphate isomerase; [M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation.
  
  
 0.893
AFY17994.1
Anti-sigma-factor antagonist (STAS); [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
 
   
 0.815
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.791
AFY17993.1
Toluene tolerance protein; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
 
  
 0.769
AFY17975.1
[S] COG3164 Predicted membrane protein.
  
     0.741
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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