STRINGSTRING
trxB1 trxB1 trxA trxA rpe rpe AFY21598.1 AFY21598.1 ahpC ahpC AFY19210.1 AFY19210.1 metG metG AFY20317.1 AFY20317.1 lsfA lsfA ybbN ybbN trxC trxC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxB1[O] COG0492 Thioredoxin reductase. (318 aa)    
Predicted Functional Partners:
trxA
Thioredoxin; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
 
 0.902
rpe
[G] COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.850
AFY21598.1
[O] COG0450 Peroxiredoxin.
  
 
 0.753
ahpC
Alkyl hydroperoxide reductase subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.744
AFY19210.1
Cytochrome c biogenesis protein,transmembrane region; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.665
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.658
AFY20317.1
Peroxidase; [O] COG0450 Peroxiredoxin.
  
 
 0.656
lsfA
Peroxidase; [O] COG0450 Peroxiredoxin.
  
 
 0.656
ybbN
Thioredoxin; [O] COG3118 Thioredoxin domain-containing protein.
  
 
 0.649
trxC
[OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.635
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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