STRINGSTRING
AFY18157.1 AFY18157.1 AFY19685.1 AFY19685.1 AFY18156.1 AFY18156.1 AFY21033.1 AFY21033.1 AFY18927.1 AFY18927.1 AFY19441.1 AFY19441.1 AFY18154.1 AFY18154.1 xseA xseA AFY20614.1 AFY20614.1 AFY19375.1 AFY19375.1 AFY21753.1 AFY21753.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18157.1Hypothetical protein; [R] COG0730 Predicted permeases. (255 aa)    
Predicted Functional Partners:
AFY19685.1
Hypothetical protein.
  
     0.617
AFY18156.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.612
AFY21033.1
Hypothetical protein.
  
     0.562
AFY18927.1
Heme peroxidase; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
    0.560
AFY19441.1
Hypothetical protein.
  
     0.545
AFY18154.1
M24/M37 family peptidase; [M] COG0739 Membrane proteins related to metalloendopeptidases.
       0.540
xseA
Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.540
AFY20614.1
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
  
     0.490
AFY19375.1
Hypothetical protein.
  
     0.466
AFY21753.1
Hypothetical protein.
 
     0.462
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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