STRINGSTRING
AFY18209.1 AFY18209.1 rlpA2 rlpA2 AFY17545.1 AFY17545.1 amiC amiC AFY18208.1 AFY18208.1 AFY17455.1 AFY17455.1 chrA chrA AFY18630.1 AFY18630.1 AFY22120.1 AFY22120.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18209.1[M] COG0744 Membrane carboxypeptidase (penicillin-binding protein). (1040 aa)    
Predicted Functional Partners:
rlpA2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
 
 0.617
AFY17545.1
Sporulation domain protein; [D] COG3087 Cell division protein.
   
 
 0.516
amiC
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
  
 
 0.495
AFY18208.1
Hypothetical protein.
       0.461
AFY17455.1
Hypothetical protein.
  
     0.456
chrA
[P] COG2059 Chromate transport protein ChrA.
 
     0.426
AFY18630.1
Hypothetical protein.
  
     0.414
AFY22120.1
[T] COG4585 Signal transduction histidine kinase.
  
  
 0.409
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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