cspA protein (Pseudomonas sp. UW4) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

co-expression

protein homology

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Score

cspA

[K] COG1278 Cold shock proteins. (69 aa)

Predicted Functional Partners:

rpmA

0.554

rpsB

0.539

AFY17868.1

0.534

rplB

0.510

plsB

0.509

rpsL

0.509

rpmE

0.495

rpoZ

0.477

rpmJ

0.471

rpoB

0.468

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17868.1	cspA	PputUW4_00661	PputUW4_01073	[KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.	[K] COG1278 Cold shock proteins.	0.534
AFY17868.1	rplB	PputUW4_00661	PputUW4_04881	[KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.588
AFY17868.1	rpoB	PputUW4_00661	PputUW4_04891	[KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.974
AFY17868.1	rpoZ	PputUW4_00661	PputUW4_05335	[KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.958
AFY17868.1	rpsB	PputUW4_00661	PputUW4_01088	[KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.	[J] COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.549
AFY17868.1	rpsL	PputUW4_00661	PputUW4_04889	[KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.498
cspA	AFY17868.1	PputUW4_01073	PputUW4_00661	[K] COG1278 Cold shock proteins.	[KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.	0.534
cspA	plsB	PputUW4_01073	PputUW4_01072	[K] COG1278 Cold shock proteins.	[I] COG2937 Glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.	0.509
cspA	rplB	PputUW4_01073	PputUW4_04881	[K] COG1278 Cold shock proteins.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.510
cspA	rpmA	PputUW4_01073	PputUW4_04675	[K] COG1278 Cold shock proteins.	[J] COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.554
cspA	rpmE	PputUW4_01073	PputUW4_00340	[K] COG1278 Cold shock proteins.	50S ribosomal protein L31; Binds the 23S rRNA.	0.495
cspA	rpmJ	PputUW4_01073	PputUW4_04863	[K] COG1278 Cold shock proteins.	[J] COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.471
cspA	rpoB	PputUW4_01073	PputUW4_04891	[K] COG1278 Cold shock proteins.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.468
cspA	rpoZ	PputUW4_01073	PputUW4_05335	[K] COG1278 Cold shock proteins.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.477
cspA	rpsB	PputUW4_01073	PputUW4_01088	[K] COG1278 Cold shock proteins.	[J] COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.539
cspA	rpsL	PputUW4_01073	PputUW4_04889	[K] COG1278 Cold shock proteins.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.509
plsB	cspA	PputUW4_01072	PputUW4_01073	[I] COG2937 Glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.	[K] COG1278 Cold shock proteins.	0.509
rplB	AFY17868.1	PputUW4_04881	PputUW4_00661	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	[KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family.	0.588
rplB	cspA	PputUW4_04881	PputUW4_01073	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	[K] COG1278 Cold shock proteins.	0.510
rplB	rpmA	PputUW4_04881	PputUW4_04675	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	[J] COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.991