STRINGSTRING
AFY18284.1 AFY18284.1 AFY20295.1 AFY20295.1 AFY18736.1 AFY18736.1 AFY18737.1 AFY18737.1 AFY18556.1 AFY18556.1 AFY21885.1 AFY21885.1 pvdD pvdD AFY18285.1 AFY18285.1 AFY19872.1 AFY19872.1 dapE dapE AFY21661.1 AFY21661.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Textmining
[Homology]
Score
AFY18284.1[M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis. (863 aa)    
Predicted Functional Partners:
AFY20295.1
Hypothetical protein; [S] COG5616 Predicted integral membrane protein.
  
 
 0.656
AFY18736.1
Hypothetical protein; [M] COG0438 Glycosyltransferase.
  
 
 0.634
AFY18737.1
Hypothetical protein; [M] COG0438 Glycosyltransferase.
  
 
 0.634
AFY18556.1
Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.
  
  
 0.607
AFY21885.1
Diguanylate cyclase/phosphodiesterase withPAS/PAC sensor(s); [T] COG2202 FOG: PAS/PAC domain.
  
  
 0.607
pvdD
[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.590
AFY18285.1
UBA/THIF-type NAD/FAD binding protein; [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1.
       0.585
AFY19872.1
GAF domain/GGDEF domain/EAL domain-containing protein; [T] COG2200 FOG: EAL domain; COG2199 FOG: GGDEF domain.
  
  
 0.532
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
     
 0.529
AFY21661.1
[G] COG0726 Predicted xylanase/chitin deacetylase.
 
  
 0.523
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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