STRINGSTRING
AFY18345.1 AFY18345.1 AFY18344.1 AFY18344.1 cmk cmk efp efp AFY18346.1 AFY18346.1 scpB scpB rlmL rlmL xthA1 xthA1 xthA2 xthA2 xth xth AFY18343.1 AFY18343.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AFY18345.1RNA-binding S4; [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases. (236 aa)    
Predicted Functional Partners:
AFY18344.1
Hypothetical protein.
       0.625
cmk
[F] COG0283 Cytidylate kinase.
  
  
 0.593
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.537
AFY18346.1
GCN5-related N-acetyltransferase; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.532
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.489
rlmL
23S rRNA m(2)G2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
  
 
 0.487
xthA1
[L] COG0708 Exonuclease III.
  
    0.484
xthA2
[L] COG0708 Exonuclease III.
  
    0.484
xth
[L] COG0708 Exonuclease III.
  
    0.484
AFY18343.1
3-oxoacyl-(acyl-carrier-protein) reductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.482
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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