STRINGSTRING
AFY18349.1 AFY18349.1 AFY18350.1 AFY18350.1 AFY17776.1 AFY17776.1 AFY19166.1 AFY19166.1 AFY21679.1 AFY21679.1 AFY17641.1 AFY17641.1 AFY19165.1 AFY19165.1 algX algX AFY18604.1 AFY18604.1 fusC fusC AFY19966.1 AFY19966.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18349.1Virulence factor family protein. (431 aa)    
Predicted Functional Partners:
AFY18350.1
Transmembrane acid tolerance protein; [S] COG2898 Uncharacterized conserved protein.
 
   
 0.958
AFY17776.1
Lipoprotein.
  
     0.620
AFY19166.1
Hypothetical protein.
  
     0.562
AFY21679.1
Hypothetical protein.
  
     0.547
AFY17641.1
HAMP domain protein; [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression.
  
     0.523
AFY19165.1
Hypothetical protein.
  
     0.504
algX
Alginate biosynthesis protein AlgX.
  
     0.481
AFY18604.1
CHAD domain protein.
  
     0.449
fusC
Fusaric acid resistance protein; [S] COG1289 Predicted membrane protein.
  
     0.434
AFY19966.1
Hypothetical protein.
  
     0.429
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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